The tapered crankshaft end where the flywheel bolts on is fairly malleable (easy to bend). Are you sure its the flywheel, and not the crankshaft, that is bent?
How I know this: during the building of several different Honda stator testers, several crankshaft ends were liberated and machined to fit shafting that can be spun with an electric motor drive. All the CT90, S90, C70, CT70, SL70, and other small single and twin Honda motorcycle crankshafts are easily bent and machined.
Side note: straightened two freebie, bent cranks by placing shims under the flywheel on the low side, torquing the flywheel down to bend the crankshaft, and by over-correcting a little bit, when the pressure was eased off I got a nice straight crankshaft. These repaired cranks were NOT run in an engine again, I cut the flywheel end off and used the tapers (and flywheels) to build stator testers.
Neither have failed, and both have seen 10,000 RPM for a time.
Side note 2: I have never seen anyone bend a Honda flywheel, not saying it cannot be done, no Sir, just that the crank seems much easier to ruin and it is worth at least checking.
Jon