Not knowing exactly how yours is wired, I'm not going into how too test it. Your dealing with a lot of voltage and amperage. Lipo batteries are not something too be playing around with, without the proper know how. The little lipo in your cell phone has enough energy to blow off half your hand. So you can imagine how much energy is in yours. First do some research, learn how to do these types of test. Get a quality meter, if your getting into electrics, your going to need it.
With all that said, if you switched back to the original controller and wiring. Then still have same problem, then I'm thinking motor prob. One easy way to test battery. Get it fully charged, run setup for short time. If it, needs a long time too charge. Then you probably have a bad cell or even 2. If not and your sure you got it wired right, with the original controller, then I would go with a bad motor. Something else to look at, if your soldering connections, cold solder joints can cause surge issues too.
With all that said, if you switched back to the original controller and wiring. Then still have same problem, then I'm thinking motor prob. One easy way to test battery. Get it fully charged, run setup for short time. If it, needs a long time too charge. Then you probably have a bad cell or even 2. If not and your sure you got it wired right, with the original controller, then I would go with a bad motor. Something else to look at, if your soldering connections, cold solder joints can cause surge issues too.